Chromosome 15


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case reports   Journals   Portal   Teaching   

ENTITIES: by Chromosome band

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22

Chromosome 15


[previous]   15 15p 15q 15p13 15p12 15p11 15q11 15q12 15q13 15q14 15q15 15q21 15q22 15q23 15q24 15q25 15q26   [next]

Band 15p12

chr15:4200000-9700000 (5500 Kb)

  • Chromosomal abnormalities in band 15p12
  • Genes in band 15p12 (reference hg38)
  • External links
  • References

    Chromosomal abnormalities in band 15p12

    (click on headers to reorder columns)
    Band 1Band 2ClassEntityPartner 1Partner 2LinksTopographyMorphology[PubMed][Study]
    15p1215q12Cosmic_SVdel(15)(p12q12)  Cosmic_SV [COST198705]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    15p1215q13Cosmic_SVdel(15)(p12q13)  Cosmic_SV [COST198477]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    15p1215q14Cosmic_SVdel(15)(p12q14)  Cosmic_SV [COST198487]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    15p1215q21Cosmic_SVdel(15)(p12q21)  Cosmic_SV [COST196768]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    15p1215q21Cosmic_SVdel(15)(p12q21)  Cosmic_SV [COST197631]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    15p1215q22Cosmic_SVdel(15)(p12q22)  Cosmic_SV [COST197348]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    15p1215q23Cosmic_SVdel(15)(p12q23)  Cosmic_SV [COST198582]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    15p1215q26Cosmic_SVdel(15)(p12q26)  Cosmic_SV [COST197787]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    1q2115p12dbCRIDder(15)t(1;15)(q21;p12)  11460Lymphoplasmacytic Lymphoma[PubMed] 
    15p12 Cosmic_SVdup(15)(p12)  Cosmic_SV [COST196763]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    15p12 Cosmic_SVdup(15)(p12)  Cosmic_SV [COST198759]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    15p1215q14Cosmic_SVinv(15)(p12q14)  Cosmic_SV [COST196249]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    15p1215q21Cosmic_SVinv(15)(p12q21)  Cosmic_SV [COST196412]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    15p1215q22Cosmic_SVinv(15)(p12q22)  Cosmic_SV [COST198038]prostate__NScarcinoma__adenocarcinoma[PubMed] 

    Genes in band 15p12

    (click on headers to reorder columns)
    GoldenPath hg38Band 1Band 2ClassCloneFusionPartner 1Partner 2LinksTopographyMorphologyPubmedOmimAccession

    [ Bold normal : A; Italic normal :G; Italic small : E ]

    X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 [previous]   15 15p 15q 15p13 15p12 15p11 15q11 15q12 15q13 15q14 15q15 15q21 15q22 15q23 15q24 15q25 15q26   [next]

    External links

    Mitelman Database [NCI] : Breakpoint 15p12

    [ UCSC ][ enSembl ][ MapView - NCBI ][ 1000Genomes ][ EVS ][ CGWB ][ DGV ][ DBVar ][ OMIM ][ HapMap ][ DECIPHER ] [ ECARUCA ]
    Gene Expression (MSigDB) in 15p12  [ HTC ]  [ NCI ]  [ INV ]

    Global tables

  • Anomalies list (tabulated txt file)
  • Gene list (tabulated txt file)
  • list of gene fusions for each gene (with origins of the data)
  • list of gene fusions by origin (with topography and morphology)
  • References

  • [L] Fusion gene microarray reveals cancer type-specificity among fusion genes. Lovf M et al.Genes Chromosomes Cancer. 2011 May;50(5):348-57.   [PubMed 2011]
  • [S] A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis. Skotheim RI, et al. Mol Cancer. 2009 Jan 19;8:5.  [PubMed 21009]
  • [V] ETV6 fusion genes in hematological malignancies: A review. De Braekeleer E. et al. Leuk Res. 2012 May 12.   [PubMed 2012]
  • [GT] Cell Lines (Genentech)  [Pubmed 2015]   Nature Biotech Suppl.Table8
  • [FC] Fusion cancer (Beijing) [PubMed 2015] (the fusions are limited to class A and B)
  • [NOR] [PubMed 2016] Babiceanu M et al. Recurrent chimeric fusion RNAs in non-cancer tissues and cells. Nucleic Acids Res. 2016 Feb 2 (Table S3)
  • [URK][PubMed 2016] Urakami et al. Next generation sequencing approach for detecting 491 fusion genes from human cancer. Biomed Res. 2016;37(1):51-62.
  • [AM] [PubMed 2016] Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancersAlaei-Mahabadi B. et al.,Proc Natl Acad Sci U S A. 2016 Nov 16. pii: 201606220.
  • [FM] [PubMed 2018] Genomic hotspots but few recurrent fusion genes in breast cancer, Fimereli et al., Genes Chromosomes Cancer. (SupplTableS2.xls) 2018 Feb 13
  • [MA] [PubMed 2018] Pan-cancer genome and transcriptome analyses of1,699 paediatric leukaemias and solid tumours, Ma et al, Nature (March 2018) Table S3
  • [GAO] [PubMed 2018] Driver Fusions and Their Implications in the Development and Treatment of Human Cancers. Gao et al, Cell Reports (April 2018) Table S2
  • [MAY] [PubMed 2018] Development and Verification of an RNA Sequencing (RNA-Seq) Assay for the Detection of Gene Fusions in Tumor, Winters et al (July 2018) Table S7
  • FusionGDB: fusion gene annotation DataBase. Kim P t Zhou X. Nucleic Acids Res. 2019 Jan 8;47(D1):D994-D1004.[PubMed]site FusionGDB

    Contributor(s)

    Writtenmay 2012Philippe Dessen
      
    Updatedjanv. 2019Philippe Dessen and Jean-Loup Huret

    Citation

    This paper should be referenced as such :
    Dessen P and Huret JL. Chromosomal band 15p12. Atlas Genet Cytogenet Oncol Haematol. July 2012.
    URL : https://atlasgeneticsoncology.usal.es/classic/Bands/15p12.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : mar. janv. 22 11:53:03 CET 2019

    Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case reports   Journals   Portal   Teaching