Chromosome 9


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ENTITIES: by Chromosome band

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Chromosome 9


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Band 9p11

chr9:40000000-43000000 (3000 Kb)

  • Chromosomal abnormalities in band 9p11
  • Genes in band 9p11 (reference hg38)
  • External links
  • References

    Chromosomal abnormalities in band 9p11

    (click on headers to reorder columns)
    Band 1Band 2ClassEntityPartner 1Partner 2LinksTopographyMorphology[PubMed][Study]
    9p11 Mitelmandel(9)(p11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p11 Mitelmandel(9)(p11)  Mitelman (CGAP) Acute myeloblastic leukemia without maturation (FAB type M1)  
    9p11 Mitelmandel(9)(p11)  Mitelman (CGAP) Acute myelomonocytic leukemia (FAB type M4)  
    9p11 Mitelmandel(9)(p11)  Mitelman (CGAP)BrainAstrocytoma, grade III-IV/Glioblastoma  
    9p11 Mitelmandel(9)(p11)  Mitelman (CGAP) Diffuse large B-cell lymphoma  
    9p11 Mitelmandel(9)(p11)  Mitelman (CGAP)KidneyAdenocarcinoma  
    9p11 Mitelmandel(9)(p11)  Mitelman (CGAP)LungAdenocarcinoma  
    9p11 Mitelmandel(9)(p11)  Mitelman (CGAP) Multiple myeloma  
    9p11 Mitelmandel(9)(p11)  Mitelman (CGAP)SkinMalignant melanoma  
    9p11 Mitelmandel(9)(p11)  Mitelman (CGAP)Soft tissueMalignant peripheral nerve sheath tumor/Triton  
    9p119p13Mitelmandel(9)(p11p13)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p119p21Mitelmandel(9)(p11p21)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p119p22Mitelmandel(9)(p11p22)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p119q12Cosmic_SVdel(9)(p11q12)  Cosmic_SV [COST518767]lung__NScarcinoma__adenocarcinoma  
    9p1112p12Mitelmander(12)t(9;12)(p11;p12)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p11 Mitelmander(9)del(9)(p11)del(9)(q12)  Mitelman (CGAP)Uterus, corpusEndometrial stromal sarcoma  
    9p11 Mitelmander(9)del(9)(p11)del(9)(q22)  Mitelman (CGAP)SkinMalignant melanoma  
    1q119p11Mitelmander(9)t(1;9)(q11;p11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    7q119p11Mitelmander(9)t(7;9)(q11;p11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p1112q21Mitelmander(9)t(9;12)(p11;q21)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    7p119p11Mitelmandic(7;9)(p11;p11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    7p139p11Mitelmandic(7;9)(p13;p11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p1112p11Mitelmandic(9;12)(p11;p11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p1112p12Mitelmandic(9;12)(p11;p12)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p1115p11Mitelmandic(9;15)(p11;p11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p1117p11Mitelmandic(9;17)(p11;p11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p1120p11Mitelmandic(9;20)(p11;p11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p1120q11Mitelmandic(9;20)(p11;q11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p1122p11Mitelmandic(9;22)(p11;p11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p11 Cosmic_SVdup(9)(p11)  Cosmic_SV [COST220243]pancreas__NScarcinoma__ductal_carcinoma[PubMed] 
    9p119p13dbCRIDdup(9)(p11.2p13.1)  10261[PubMed] 
    9p119p13dbCRIDdup(9)(p11.2p13.1)  10262[PubMed] 
    9p119p13dbCRIDdup(9)(p11.2p13.1)  10263Reproductive Failure[PubMed] 
    9p11 Cosmic_SVdup(9)(p11)  Cosmic_SV [COST361656]pancreas__NScarcinoma__ductal_carcinoma[PubMed] 
    9p11 Cosmic_SVdup(9)(p11)  Cosmic_SV [COST406726]pancreas__NScarcinoma__ductal_carcinoma[PubMed] 
    9p119p11Cosmic_SVdup(9)(p11p11)  Cosmic_SV [COST146954]ovary__NScarcinoma__mixed_adenosquamous_carcinoma[PubMed] 
    9p119q12Cosmic_SVdup(9)(p11q12)  Cosmic_SV [COST114847]ovary__NScarcinoma__mixed_adenosquamous_carcinoma[PubMed] 
    9p119q12Cosmic_SVdup(9)(p11q12)  Cosmic_SV [COST114847]pancreas__NScarcinoid-endocrine_tumour__NS[PubMed] 
    9p119q12Cosmic_SVdup(9)(p11q12)  Cosmic_SV [COST114847]pancreas__NScarcinoma__ductal_carcinoma[PubMed] 
    9p11 Mitelmanidic(9)(p11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p119q12Mitelmaninv(9)(p11q12)  Mitelman (CGAP) Chronic myeloid leukemia, t(9;22)  
    9p119q13dbCRIDinv(9)(p11q13)  10012Psoriasis[PubMed] 
    9p119q13dbCRIDinv(9)(p11q13)  10653Isolated Growth Hormone Deficiency[PubMed] 
    9p119q13Mitelmaninv(9)(p11q13)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p119q13Mitelmaninv(9)(p11q13)  Mitelman (CGAP) Acute myeloblastic leukemia with maturation (FAB type M2)  
    9p119q13Mitelmaninv(9)(p11q13)  Mitelman (CGAP) Acute myeloid leukemia, NOS  
    9p119q13Mitelmaninv(9)(p11q13)  Mitelman (CGAP) Acute myelomonocytic leukemia (FAB type M4)  
    9p119q13Mitelmaninv(9)(p11q13)  Mitelman (CGAP) Chronic lymphocytic leukemia  
    9p119q13Mitelmaninv(9)(p11q13)  Mitelman (CGAP) Chronic myelomonocytic leukemia  
    9p119q13Mitelmaninv(9)(p11q13)  Mitelman (CGAP)LungSquamous cell carcinoma  
    9p119q13Mitelmaninv(9)(p11q13)  Mitelman (CGAP) Mature B-cell neoplasm, NOS  
    9p119q13Mitelmaninv(9)(p11q13)  Mitelman (CGAP) Multiple myeloma  
    9p119q13Mitelmaninv(9)(p11q13)  Mitelman (CGAP) Nonneoplastic hematologic disorder/lesion  
    9p139p13Cosmic_SVinv(9)(p13p13)  Cosmic_SV [COST187252]pancreas__NScarcinoid-endocrine_tumour__NS[PubMed] 
    9p139p13Cosmic_SVinv(9)(p13p13)  Cosmic_SV [COST187252]pancreas__NScarcinoid-endocrine_tumour__NS[PubMed] 
    1p119p11dbCRIDt(1;9)(p11;p11)  10433Multiple Myeloma[PubMed] 
    1q119p11Mitelmant(1;9)(q11;p11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    7q119p11Mitelmant(7;9)(q11;p11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p1112p12Mitelmant(9;12)(p11;p12)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p1112p13Mitelmant(9;12)(p11;p13)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p1112q21Mitelmant(9;12)(p11;q21)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9p1115q11Mitelmant(9;15)(p11;q11)  Mitelman (CGAP)KidneyAdenocarcinoma  
    9p119q11Mitelmant(9;9)(p11;q11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    11q229p11Cosmic_SVu(11;9)(q22;p11)  Cosmic_SV [COST734099]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    21p119p11Cosmic_SVu(21;9)(p11;p11)  Cosmic_SV [COST553430]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    4p169p11Cosmic_SVu(4;9)(p16;p11)  Cosmic_SV [COST569615]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    6p119p11Cosmic_SVu(6;9)(p11;p11)  Cosmic_SV [COST520543]lung__NScarcinoma__adenocarcinoma  
    9p1110p11Cosmic_SVu(9;10)(p11;p11)  Cosmic_SV [COST365661]NS__NSNS__NS[PubMed] 
    9p1110p15Cosmic_SVu(9;10)(p11;p15)  Cosmic_SV [COST222435]pancreas__NScarcinoma__ductal_carcinoma[PubMed] 
    9p1111q22Cosmic_SVu(9;11)(p11;q22)  Cosmic_SV [COST740916]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    9p1117p13Cosmic_SVu(9;17)(p11;p13)  Cosmic_SV [COST327304]breast__NScarcinoma__ductal_carcinoma[PubMed] 
    9p1121p11Cosmic_SVu(9;21)(p11;p11)  Cosmic_SV [COST557335]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    9p1121p13Cosmic_SVu(9;21)(p11;p13)  Cosmic_SV [COST722228]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    9p114p16Cosmic_SVu(9;4)(p11;p16)  Cosmic_SV [COST577700]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    9p114p16Cosmic_SVu(9;4)(p11;p16)  Cosmic_SV [COST768080]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    9p119p11Cosmic_SVu(9)(p11;p11)  Cosmic_SV [COST343637]breast__NScarcinoma__ductal_carcinoma[PubMed] 
    9p119p24Cosmic_SVu(9)(p11;p24)  Cosmic_SV [COST564196]endometrium__NScarcinoma__carcinosarcoma-malignant_mesodermal_mixed_tumour[PubMed] 
    9p119q12Cosmic_SVu(9)(p11;q12)  Cosmic_SV [COST28670]haematopoietic_and_lymphoid_tissue__NSlymphoid_neoplasm__acute_lymphoblastic_T_cell_leukaemia  
    9p119q33Cosmic_SVu(9)(p11;q33)  Cosmic_SV [COST457843]breast__NScarcinoma__HER-positive_carcinoma[PubMed] 
    9p219p11Cosmic_SVu(9)(p21;p11)  Cosmic_SV [COST176116]central_nervous_system__brainglioma__astrocytoma_Grade_IV  
    9p249p11Cosmic_SVu(9)(p24;p11)  Cosmic_SV [COST336712]breast__NScarcinoma__ductal_carcinoma[PubMed] 
    9q129p11Cosmic_SVu(9)(q12;p11)  Cosmic_SV [COST559326]prostate__NScarcinoma__adenocarcinoma[PubMed] 
    9q129p11Cosmic_SVu(9)(q12;p11)  Cosmic_SV [COST565917]prostate__NScarcinoma__adenocarcinoma[PubMed] 

    Genes in band 9p11

    (click on headers to reorder columns)
    GoldenPath hg38Band 1Band 2ClassCloneFusionPartner 1Partner 2LinksTopographyMorphologyPubmedOmimAccession
    chr9:40223285-40266392 + 9p11   Gene [G]     ANKRD20A2       [Omim] [Entrez]
    chr9:40223319-40266845 + 9p11   Gene [G]     ANKRD20A3       [Omim] [Entrez]
    chr9:40323571-40329220 + 9p11   Gene [G]     FAM95B1       [Omim] [Entrez]
    chr9:40323571-40329220 + 9p11   Gene [G]     LOC105379252       [Omim] [Entrez]
    chr9:40348499-40353658 + 9p11   Gene [G]     GXYLT1P3       [Omim] [Entrez]
    chr9:40463758-40498781 - 9p11   Gene [G]     AQP7P3       [Omim] [Entrez]
    chr9:40499731-40566583 + 9p11   Gene [G]     LOC101929583       [Omim] [Entrez]
    chr9:40499981-40578494 + 9p11   Gene [G]     LOC102724580       [Omim] [Entrez]
    chr9:40929010-40929092 - 9p11   Gene [G]     MIR1299       [Omim] [Entrez]
    chr9:40992261-41039103 + 9p11   Gene [G]     FRG1HP       [Omim] [Entrez]
    chr9:41007015-41074625 - 9p11   Gene [G]     PGM5P2       [Omim] [Entrez]
    chr9:41100967-41108930 - 9p11   Gene [G]     LOC440896       [Omim] [Entrez]
    chr9:41126251-41128975 - 9p11   Gene [G]     FOXD4L6       [Omim] [Entrez]
    chr9:41131309-41189364 - 9p11 10p15 Gene [CT]   CBWD6/KLF6 CBWD6 KLF6 [ChiTaRS]  
    [FusionGDB]  
        [Omim] [GenBank]
    chr9:41131309-41189364 - 9p11   Gene [FM]   CR786580.1/CBWD6 CBWD6 CR786580.1   [PubMed] [Omim] [Entrez]
    chr9:41131309-41189364 - 9p11   Gene [G]     CBWD6       [Omim] [Entrez]
    chr9:41358862-41482101 + 9p11   Gene [G]     LOC107984035       [Omim] [Entrez]
    chr9:41694357-41699001 - 9p11   Gene [G]     FAM242F       [Omim] [Entrez]
    chr9:41891890-42129504 - 9p11   Gene [G]     CNTNAP3B       [Omim] [Entrez]
    chr9:41891890-42129504 - 9p11 10p12 Gene [M]   MLLT10/CNTNAP3B CNTNAP3B MLLT10 [Mitelman] Acute lymphoblastic leukemia/lymphoblastic lymphoma [PubMed] [Omim] [Entrez]
    chr9:42183659-42189887 + 9p11   Gene [G]     SPATA31A6       [Omim] [Entrez]
    chr9:42198862-42206016 + 9p11   Gene [G]     FAM74A7       [Omim] [Entrez]
    chr9:42567859-42569349 - 9p11   Gene [G]     LOC103908605       [Omim] [Entrez]
    chr9:42579805-42586534 - 9p11   Gene [G]     LOC101927827       [Omim] [Entrez]
    chr9:42788400-42789608 + 9p11   Gene [G]     XLOC_007697       [Omim] [Entrez]

    [ Bold normal : A; Italic normal :G; Italic small : E ]

    X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 [previous]   9 9p 9q 9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34   [next]

    External links

    Mitelman Database [NCI] : Breakpoint 9p11

    [ UCSC ][ enSembl ][ MapView - NCBI ][ 1000Genomes ][ EVS ][ CGWB ][ DGV ][ DBVar ][ OMIM ][ HapMap ][ DECIPHER ] [ ECARUCA ]
    Gene Expression (MSigDB) in 9p11  [ HTC ]  [ NCI ]  [ INV ]

    Global tables

  • Anomalies list (tabulated txt file)
  • Gene list (tabulated txt file)
  • list of gene fusions for each gene (with origins of the data)
  • list of gene fusions by origin (with topography and morphology)
  • References

  • [L] Fusion gene microarray reveals cancer type-specificity among fusion genes. Lovf M et al.Genes Chromosomes Cancer. 2011 May;50(5):348-57.   [PubMed 2011]
  • [S] A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis. Skotheim RI, et al. Mol Cancer. 2009 Jan 19;8:5.  [PubMed 21009]
  • [V] ETV6 fusion genes in hematological malignancies: A review. De Braekeleer E. et al. Leuk Res. 2012 May 12.   [PubMed 2012]
  • [GT] Cell Lines (Genentech)  [Pubmed 2015]   Nature Biotech Suppl.Table8
  • [FC] Fusion cancer (Beijing) [PubMed 2015] (the fusions are limited to class A and B)
  • [NOR] [PubMed 2016] Babiceanu M et al. Recurrent chimeric fusion RNAs in non-cancer tissues and cells. Nucleic Acids Res. 2016 Feb 2 (Table S3)
  • [URK][PubMed 2016] Urakami et al. Next generation sequencing approach for detecting 491 fusion genes from human cancer. Biomed Res. 2016;37(1):51-62.
  • [AM] [PubMed 2016] Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancersAlaei-Mahabadi B. et al.,Proc Natl Acad Sci U S A. 2016 Nov 16. pii: 201606220.
  • [FM] [PubMed 2018] Genomic hotspots but few recurrent fusion genes in breast cancer, Fimereli et al., Genes Chromosomes Cancer. (SupplTableS2.xls) 2018 Feb 13
  • [MA] [PubMed 2018] Pan-cancer genome and transcriptome analyses of1,699 paediatric leukaemias and solid tumours, Ma et al, Nature (March 2018) Table S3
  • [GAO] [PubMed 2018] Driver Fusions and Their Implications in the Development and Treatment of Human Cancers. Gao et al, Cell Reports (April 2018) Table S2
  • [MAY] [PubMed 2018] Development and Verification of an RNA Sequencing (RNA-Seq) Assay for the Detection of Gene Fusions in Tumor, Winters et al (July 2018) Table S7
  • FusionGDB: fusion gene annotation DataBase. Kim P t Zhou X. Nucleic Acids Res. 2019 Jan 8;47(D1):D994-D1004.[PubMed]site FusionGDB

    Contributor(s)

    Writtenmay 2012Philippe Dessen
      
    Updatedjanv. 2019Philippe Dessen and Jean-Loup Huret

    Citation

    This paper should be referenced as such :
    Dessen P and Huret JL. Chromosomal band 9p11. Atlas Genet Cytogenet Oncol Haematol. July 2012.
    URL : https://atlasgeneticsoncology.usal.es/classic/Bands/9p11.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : mar. janv. 22 11:49:09 CET 2019

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