Chromosome 9


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ENTITIES: by Chromosome band

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Chromosome 9


[previous]   9 9p 9q 9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34   [next]

Band 9q11

chr9:43000000-45500000 (2500 Kb)

  • Chromosomal abnormalities in band 9q11
  • Genes in band 9q11 (reference hg38)
  • External links
  • References

    Chromosomal abnormalities in band 9q11

    (click on headers to reorder columns)
    Band 1Band 2ClassEntityPartner 1Partner 2LinksTopographyMorphology[PubMed][Study]
    9q11 Mitelmandel(9)(q11)  Mitelman (CGAP) Acute myeloblastic leukemia without maturation (FAB type M1)  
    9q11 Mitelmandel(9)(q11)  Mitelman (CGAP) Acute myeloid leukemia, NOS  
    9q11 Mitelmandel(9)(q11)  Mitelman (CGAP) Burkitt lymphoma/leukemia  
    9q11 Mitelmandel(9)(q11)  Mitelman (CGAP) Chronic lymphocytic leukemia  
    9q11 Mitelmandel(9)(q11)  Mitelman (CGAP) Diffuse large B-cell lymphoma  
    9q11 Mitelmandel(9)(q11)  Mitelman (CGAP)Oral cavityNonneoplastic epithelial disorder/lesion  
    9q11 Mitelmandel(9)(q11)  Mitelman (CGAP)SkeletonOsteosarcoma, NOS  
    9q119q13Mitelmandel(9)(q11q13)  Mitelman (CGAP) Chronic lymphocytic leukemia  
    9q119q21Mitelmandel(9)(q11q21)  Mitelman (CGAP) Acute myeloblastic leukemia with maturation (FAB type M2)  
    9q119q21Mitelmandel(9)(q11q21)  Mitelman (CGAP) Acute myeloid leukemia, NOS  
    9q119q22Mitelmandel(9)(q11q22)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9q119q22Mitelmandel(9)(q11q22)  Mitelman (CGAP) Acute myeloblastic leukemia with maturation (FAB type M2)  
    9q119q22Mitelmandel(9)(q11q22)  Mitelman (CGAP) Acute myeloblastic leukemia without maturation (FAB type M1)  
    9q119q22Mitelmandel(9)(q11q22)  Mitelman (CGAP) Refractory anemia  
    9q119q32Mitelmandel(9)(q11q32)  Mitelman (CGAP) Acute myeloblastic leukemia with maturation (FAB type M2)  
    9q119q34Mitelmandel(9)(q11q34)  Mitelman (CGAP) Acute myeloblastic leukemia with maturation (FAB type M2)  
    9q1112p13Mitelmander(12)t(9;12)(q11;p13)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9q1117p11Mitelmander(17)t(9;17)(q11;p11)  Mitelman (CGAP) Acute myeloid leukemia, NOS  
    1p349q11Mitelmander(1)t(1;9)(p34;q11)  Mitelman (CGAP)TestisTeratoma (mature and immature)  
    7p119q11Mitelmander(7)t(7;9)(p11;q11)  Mitelman (CGAP)SkinMalignant melanoma  
    9q1111p11Mitelmander(9)t(9;11)(q11;p11)  Mitelman (CGAP) Mantle cell lymphoma  
    9q1114q11dbCRIDder(9)t(9;14)(q11;q11)  11703T-Cell Prolymphocytic Leukemia[PubMed] 
    9q11 Mitelmani(9)(q11)  Mitelman (CGAP)TongueSquamous cell carcinoma  
    1p119q11Mitelmant(1;9)(p11;q11)  Mitelman (CGAP) Anaplastic large cell lymphoma, systemic type  
    1p349q11Mitelmant(1;9)(p34;q11)  Mitelman (CGAP)TestisTeratoma (mature and immature)  
    7p119q11Mitelmant(7;9)(p11;q11)  Mitelman (CGAP)SkinMalignant melanoma  
    9q1111p11Mitelmant(9;11)(q11;p11)  Mitelman (CGAP) Mantle cell lymphoma  
    9q1112p13dbCRIDt(9;12)(q11;p13)  10951Acute Lymphoblastic Leukemia[PubMed] 
    9q1112p13Mitelmant(9;12)(q11;p13)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  
    9q1117p11Mitelmant(9;17)(q11;p11)  Mitelman (CGAP) Acute myeloid leukemia, NOS  
    9p119q11Mitelmant(9;9)(p11;q11)  Mitelman (CGAP) Acute lymphoblastic leukemia/lymphoblastic lymphoma  

    Genes in band 9q11

    (click on headers to reorder columns)
    GoldenPath hg38Band 1Band 2ClassCloneFusionPartner 1Partner 2LinksTopographyMorphologyPubmedOmimAccession

    [ Bold normal : A; Italic normal :G; Italic small : E ]

    X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 [previous]   9 9p 9q 9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34   [next]

    External links

    Mitelman Database [NCI] : Breakpoint 9q11

    [ UCSC ][ enSembl ][ MapView - NCBI ][ 1000Genomes ][ EVS ][ CGWB ][ DGV ][ DBVar ][ OMIM ][ HapMap ][ DECIPHER ] [ ECARUCA ]
    Gene Expression (MSigDB) in 9q11  [ HTC ]  [ NCI ]  [ INV ]

    Global tables

  • Anomalies list (tabulated txt file)
  • Gene list (tabulated txt file)
  • list of gene fusions for each gene (with origins of the data)
  • list of gene fusions by origin (with topography and morphology)
  • References

  • [L] Fusion gene microarray reveals cancer type-specificity among fusion genes. Lovf M et al.Genes Chromosomes Cancer. 2011 May;50(5):348-57.   [PubMed 2011]
  • [S] A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis. Skotheim RI, et al. Mol Cancer. 2009 Jan 19;8:5.  [PubMed 21009]
  • [V] ETV6 fusion genes in hematological malignancies: A review. De Braekeleer E. et al. Leuk Res. 2012 May 12.   [PubMed 2012]
  • [GT] Cell Lines (Genentech)  [Pubmed 2015]   Nature Biotech Suppl.Table8
  • [FC] Fusion cancer (Beijing) [PubMed 2015] (the fusions are limited to class A and B)
  • [NOR] [PubMed 2016] Babiceanu M et al. Recurrent chimeric fusion RNAs in non-cancer tissues and cells. Nucleic Acids Res. 2016 Feb 2 (Table S3)
  • [URK][PubMed 2016] Urakami et al. Next generation sequencing approach for detecting 491 fusion genes from human cancer. Biomed Res. 2016;37(1):51-62.
  • [AM] [PubMed 2016] Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancersAlaei-Mahabadi B. et al.,Proc Natl Acad Sci U S A. 2016 Nov 16. pii: 201606220.
  • [FM] [PubMed 2018] Genomic hotspots but few recurrent fusion genes in breast cancer, Fimereli et al., Genes Chromosomes Cancer. (SupplTableS2.xls) 2018 Feb 13
  • [MA] [PubMed 2018] Pan-cancer genome and transcriptome analyses of1,699 paediatric leukaemias and solid tumours, Ma et al, Nature (March 2018) Table S3
  • [GAO] [PubMed 2018] Driver Fusions and Their Implications in the Development and Treatment of Human Cancers. Gao et al, Cell Reports (April 2018) Table S2
  • [MAY] [PubMed 2018] Development and Verification of an RNA Sequencing (RNA-Seq) Assay for the Detection of Gene Fusions in Tumor, Winters et al (July 2018) Table S7
  • FusionGDB: fusion gene annotation DataBase. Kim P t Zhou X. Nucleic Acids Res. 2019 Jan 8;47(D1):D994-D1004.[PubMed]site FusionGDB

    Contributor(s)

    Writtenmay 2012Philippe Dessen
      
    Updatedjanv. 2019Philippe Dessen and Jean-Loup Huret

    Citation

    This paper should be referenced as such :
    Dessen P and Huret JL. Chromosomal band 9q11. Atlas Genet Cytogenet Oncol Haematol. July 2012.
    URL : https://atlasgeneticsoncology.usal.es/classic/Bands/9q11.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : mar. janv. 22 11:49:12 CET 2019

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