APOC4-APOC2 (APOC4-APOC2 readthrough (NMD candidate))

1. Identity

Alias_names
General Information
Other alias-
HGNC (Hugo) APOC4-APOC2
LocusID (NCBI) 100533990
Atlas_Id 60433
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 44942238 and ends at 44949565 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

2. DNA/RNA

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

 


3. External links

Nomenclature
HGNC (Hugo)APOC4-APOC2   44426
Cards
Entrez_Gene (NCBI)APOC4-APOC2  100533990  APOC4-APOC2 readthrough (NMD candidate)
Aliases
GeneCards (Weizmann)APOC4-APOC2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View] &nbsp [Sequence]  chr19:44942238-44949565 [Contig_View]  APOC4-APOC2 [Vega]
TCGA cBioPortalAPOC4-APOC2
AceView (NCBI)APOC4-APOC2
Genatlas (Paris)APOC4-APOC2
WikiGenes100533990
SOURCE (Princeton)APOC4-APOC2
Genetics Home Reference (NIH)APOC4-APOC2
Genomic and cartography
GoldenPath hg38 (UCSC)APOC4-APOC2  -     chr19:44942238-44949565 +  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)APOC4-APOC2  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblAPOC4-APOC2 - 19q13.32 [CytoView hg19]  APOC4-APOC2 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIAPOC4-APOC2 [Mapview hg19]  APOC4-APOC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126257
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)APOC4-APOC2
Cluster EST : UnigeneHs.731599 [ NCBI ]
CGAP (NCI)Hs.731599
Gene ExpressionAPOC4-APOC2 [ NCBI-GEO ]   APOC4-APOC2 [ EBI - ARRAY_EXPRESS ]   APOC4-APOC2 [ SEEK ]   APOC4-APOC2 [ MEM ]
Gene Expression Viewer (FireBrowse)APOC4-APOC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets] &nbsp [Normal Tissue Atlas] &nbsp[carcinoma Classsification] &nbsp[NCI60]
BioGPS (Tissue expression)100533990
GTEX Portal (Tissue expression)APOC4-APOC2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)APOC4-APOC2
DMDM Disease mutations100533990
Blocks (Seattle)APOC4-APOC2
Protein Interaction databases
BioGRIDAPOC4-APOC2
STRING (EMBL)APOC4-APOC2
ZODIACAPOC4-APOC2
Ontologies - Pathways
Huge Navigator APOC4-APOC2 [HugePedia]
snp3D : Map Gene to Disease100533990
BioCentury BCIQAPOC4-APOC2
ClinGenAPOC4-APOC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100533990
Clinical trialAPOC4-APOC2
Miscellaneous
canSAR (ICR)APOC4-APOC2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAPOC4-APOC2
EVEXAPOC4-APOC2
GoPubMedAPOC4-APOC2
iHOPAPOC4-APOC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:35:45 CEST 2018

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