CCNL1 (cyclin L1)

1. Identity

Alias_symbol (synonym)
General Information
Other aliasANIA6A
BM-001
PRO1073
HGNC (Hugo) CCNL1
LocusID (NCBI) 57018
Atlas_Id 963
Location 3q25.31  [Link to chromosome band 3q25]
Location_base_pair Starts at 157147556 and ends at 157160760 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CAMSAP2 (1q32.1) / CCNL1 (3q25.31)RAB5B (12q13.2) / CCNL1 (3q25.31)

2. DNA/RNA

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

 

3. External links

Nomenclature
HGNC (Hugo)CCNL1   20569
Cards
Entrez_Gene (NCBI)CCNL1  57018  cyclin L1
AliasesANIA6A; BM-001; PRO1073; ania-6a
GeneCards (Weizmann)CCNL1
Ensembl hg19 (Hinxton)ENSG00000163660 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163660 [Gene_View] &nbspENSG00000163660 [Sequence]  chr3:157147556-157160760 [Contig_View]  CCNL1 [Vega]
ICGC DataPortalENSG00000163660
TCGA cBioPortalCCNL1
AceView (NCBI)CCNL1
Genatlas (Paris)CCNL1
WikiGenes57018
SOURCE (Princeton)CCNL1
Genetics Home Reference (NIH)CCNL1
Genomic and cartography
GoldenPath hg38 (UCSC)CCNL1  -     chr3:157147556-157160760 -  3q25.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCNL1  -     3q25.31   [Description]    (hg19-Feb_2009)
EnsemblCCNL1 - 3q25.31 [CytoView hg19]  CCNL1 - 3q25.31 [CytoView hg38]
Mapping of homologs : NCBICCNL1 [Mapview hg19]  CCNL1 [Mapview hg38]
OMIM613384   
Gene and transcription
Genbank (Entrez)AF180920 AF208843 AF367476 AF367477 AK022974
RefSeq transcript (Entrez)NM_001308185 NM_020307
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCNL1
Cluster EST : UnigeneHs.4859 [ NCBI ]
CGAP (NCI)Hs.4859
Alternative Splicing GalleryENSG00000163660
Gene ExpressionCCNL1 [ NCBI-GEO ]   CCNL1 [ EBI - ARRAY_EXPRESS ]   CCNL1 [ SEEK ]   CCNL1 [ MEM ]
Gene Expression Viewer (FireBrowse)CCNL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets] &nbsp [Normal Tissue Atlas] &nbsp[carcinoma Classsification] &nbsp[NCI60]
GenevestigatorExpression in : [tissues] &nbsp[cell-lines] &nbsp[cancer] &nbsp[perturbations] &nbsp
BioGPS (Tissue expression)57018
GTEX Portal (Tissue expression)CCNL1
Human Protein AtlasENSG00000163660-CCNL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK58   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK58  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK58
Splice isoforms : SwissVarQ9UK58
PhosPhoSitePlusQ9UK58
Domains : Interpro (EBI)Cyclin-like    Cyclin-like_sf    Cyclin_C-dom    Cyclin_L1    Cyclin_N   
Domain families : Pfam (Sanger)Cyclin_C (PF02984)    Cyclin_N (PF00134)   
Domain families : Pfam (NCBI)pfam02984    pfam00134   
Domain families : Smart (EMBL)CYCLIN (SM00385)  Cyclin_C (SM01332)  
Conserved Domain (NCBI)CCNL1
DMDM Disease mutations57018
Blocks (Seattle)CCNL1
SuperfamilyQ9UK58
Human Protein Atlas [tissue]ENSG00000163660-CCNL1 [tissue]
Peptide AtlasQ9UK58
HPRD10814
IPIIPI00654682   IPI00654772   IPI00186287   IPI00791836   IPI00945314   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK58
IntAct (EBI)Q9UK58
FunCoupENSG00000163660
BioGRIDCCNL1
STRING (EMBL)CCNL1
ZODIACCCNL1
Ontologies - Pathways
QuickGOQ9UK58
Ontology : AmiGOregulation of cyclin-dependent protein serine/threonine kinase activity  protein binding  nucleus  nucleus  regulation of transcription by RNA polymerase II  RNA processing  cyclin-dependent protein serine/threonine kinase regulator activity  nuclear speck  
Ontology : EGO-EBIregulation of cyclin-dependent protein serine/threonine kinase activity  protein binding  nucleus  nucleus  regulation of transcription by RNA polymerase II  RNA processing  cyclin-dependent protein serine/threonine kinase regulator activity  nuclear speck  
NDEx NetworkCCNL1
Atlas of Cancer Signalling NetworkCCNL1
Wikipedia pathwaysCCNL1
Orthology - Evolution
OrthoDB57018
GeneTree (enSembl)ENSG00000163660
Phylogenetic Trees/Animal Genes : TreeFamCCNL1
HOGENOMQ9UK58
Homologs : HomoloGeneCCNL1
Homology/Alignments : Family Browser (UCSC)CCNL1
Gene fusions - Rearrangements
Fusion : QuiverCCNL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCNL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCNL1
dbVarCCNL1
ClinVarCCNL1
1000_GenomesCCNL1 
Exome Variant ServerCCNL1
ExAC (Exome Aggregation Consortium)ENSG00000163660
GNOMAD BrowserENSG00000163660
Varsome BrowserCCNL1
Genetic variants : HAPMAP57018
Genomic Variants (DGV)CCNL1 [DGVbeta]
DECIPHERCCNL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCNL1 
Mutations
ICGC Data PortalCCNL1 
TCGA Data PortalCCNL1 
Broad Tumor PortalCCNL1
OASIS PortalCCNL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCNL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCNL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCNL1
DgiDB (Drug Gene Interaction Database)CCNL1
DoCM (Curated mutations)CCNL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCNL1 (select a term)
intoGenCCNL1
Cancer3DCCNL1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613384   
Orphanet
DisGeNETCCNL1
MedgenCCNL1
Genetic Testing Registry CCNL1
NextProtQ9UK58 [Medical]
TSGene57018
GENETestsCCNL1
Target ValidationCCNL1
Huge Navigator CCNL1 [HugePedia]
snp3D : Map Gene to Disease57018
BioCentury BCIQCCNL1
ClinGenCCNL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57018
Chemical/Pharm GKB GenePA134980948
Clinical trialCCNL1
Miscellaneous
canSAR (ICR)CCNL1 (select the gene name)
DataMed IndexCCNL1
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCNL1
EVEXCCNL1
GoPubMedCCNL1
iHOPCCNL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jan 17 18:05:05 CET 2019

For comments and suggestions or contributions, please contact us atlasgeneticsoncology@usal.es.