HCFC1-AS1 (HCFC1 antisense RNA 1)

1. Identity

Alias_names
General Information
Other alias-
HGNC (Hugo) HCFC1-AS1
LocusID (NCBI) 100873990
Atlas_Id 64192
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 153968765 and ends at 153970091 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

2. DNA/RNA

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

 


3. External links

Nomenclature
HGNC (Hugo)HCFC1-AS1   40273
Cards
Entrez_Gene (NCBI)HCFC1-AS1  100873990  HCFC1 antisense RNA 1
Aliases
GeneCards (Weizmann)HCFC1-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View] &nbsp [Sequence]  chrX:153968765-153970091 [Contig_View]  HCFC1-AS1 [Vega]
TCGA cBioPortalHCFC1-AS1
AceView (NCBI)HCFC1-AS1
Genatlas (Paris)HCFC1-AS1
WikiGenes100873990
SOURCE (Princeton)HCFC1-AS1
Genetics Home Reference (NIH)HCFC1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)HCFC1-AS1  -     chrX:153968765-153970091 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HCFC1-AS1  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblHCFC1-AS1 - Xq28 [CytoView hg19]  HCFC1-AS1 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIHCFC1-AS1 [Mapview hg19]  HCFC1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BM988092 BQ010816 HY114223
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HCFC1-AS1
Cluster EST : UnigeneHs.682261 [ NCBI ]
CGAP (NCI)Hs.682261
Gene ExpressionHCFC1-AS1 [ NCBI-GEO ]   HCFC1-AS1 [ EBI - ARRAY_EXPRESS ]   HCFC1-AS1 [ SEEK ]   HCFC1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)HCFC1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets] &nbsp [Normal Tissue Atlas] &nbsp[carcinoma Classsification] &nbsp[NCI60]
BioGPS (Tissue expression)100873990
GTEX Portal (Tissue expression)HCFC1-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HCFC1-AS1
DMDM Disease mutations100873990
Blocks (Seattle)HCFC1-AS1
Protein Interaction databases
BioGRIDHCFC1-AS1
STRING (EMBL)HCFC1-AS1
ZODIACHCFC1-AS1
Ontologies - Pathways
Huge Navigator HCFC1-AS1 [HugePedia]
snp3D : Map Gene to Disease100873990
BioCentury BCIQHCFC1-AS1
ClinGenHCFC1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100873990
Clinical trialHCFC1-AS1
Miscellaneous
canSAR (ICR)HCFC1-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineHCFC1-AS1
EVEXHCFC1-AS1
GoPubMedHCFC1-AS1
iHOPHCFC1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:48:36 CEST 2018

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