KCNQ5-IT1 (KCNQ5 intronic transcript 1)

1. Identity

Alias_names
General Information
Other alias-
HGNC (Hugo) KCNQ5-IT1
LocusID (NCBI) 100507381
Atlas_Id 64809
Location 6q13  [Link to chromosome band 6q13]
Location_base_pair Starts at 72630495 and ends at 72678558 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

2. DNA/RNA

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

 


3. External links

Nomenclature
HGNC (Hugo)KCNQ5-IT1   41354
Cards
Entrez_Gene (NCBI)KCNQ5-IT1  100507381  KCNQ5 intronic transcript 1
Aliases
GeneCards (Weizmann)KCNQ5-IT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View] &nbsp [Sequence]  chr6:72630495-72678558 [Contig_View]  KCNQ5-IT1 [Vega]
TCGA cBioPortalKCNQ5-IT1
AceView (NCBI)KCNQ5-IT1
Genatlas (Paris)KCNQ5-IT1
WikiGenes100507381
SOURCE (Princeton)KCNQ5-IT1
Genetics Home Reference (NIH)KCNQ5-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)KCNQ5-IT1  -     chr6:72630495-72678558 +  6q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCNQ5-IT1  -     6q13   [Description]    (hg19-Feb_2009)
EnsemblKCNQ5-IT1 - 6q13 [CytoView hg19]  KCNQ5-IT1 - 6q13 [CytoView hg38]
Mapping of homologs : NCBIKCNQ5-IT1 [Mapview hg19]  KCNQ5-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX104605 HY037383
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCNQ5-IT1
Cluster EST : UnigeneHs.662412 [ NCBI ]
CGAP (NCI)Hs.662412
Gene ExpressionKCNQ5-IT1 [ NCBI-GEO ]   KCNQ5-IT1 [ EBI - ARRAY_EXPRESS ]   KCNQ5-IT1 [ SEEK ]   KCNQ5-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNQ5-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets] &nbsp [Normal Tissue Atlas] &nbsp[carcinoma Classsification] &nbsp[NCI60]
BioGPS (Tissue expression)100507381
GTEX Portal (Tissue expression)KCNQ5-IT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KCNQ5-IT1
DMDM Disease mutations100507381
Blocks (Seattle)KCNQ5-IT1
IPIIPI00982843   
Protein Interaction databases
BioGRIDKCNQ5-IT1
STRING (EMBL)KCNQ5-IT1
ZODIACKCNQ5-IT1
Ontologies - Pathways
Huge Navigator KCNQ5-IT1 [HugePedia]
snp3D : Map Gene to Disease100507381
BioCentury BCIQKCNQ5-IT1
ClinGenKCNQ5-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507381
Clinical trialKCNQ5-IT1
Miscellaneous
canSAR (ICR)KCNQ5-IT1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNQ5-IT1
EVEXKCNQ5-IT1
GoPubMedKCNQ5-IT1
iHOPKCNQ5-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:50:40 CEST 2018

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