MAPT-AS1 (MAPT antisense RNA 1)

1. Identity

Alias_names
General Information
Other alias-
HGNC (Hugo) MAPT-AS1
LocusID (NCBI) 100128977
Atlas_Id 68802
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 45843356 and ends at 45895513 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

2. DNA/RNA

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

 


3. External links

Nomenclature
HGNC (Hugo)MAPT-AS1   43738
Cards
Entrez_Gene (NCBI)MAPT-AS1  100128977  MAPT antisense RNA 1
Aliases
GeneCards (Weizmann)MAPT-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View] &nbsp [Sequence]  chr17:45843356-45895513 [Contig_View]  MAPT-AS1 [Vega]
TCGA cBioPortalMAPT-AS1
AceView (NCBI)MAPT-AS1
Genatlas (Paris)MAPT-AS1
WikiGenes100128977
SOURCE (Princeton)MAPT-AS1
Genetics Home Reference (NIH)MAPT-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)MAPT-AS1  -     chr17:45843356-45895513 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAPT-AS1  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblMAPT-AS1 - 17q21.31 [CytoView hg19]  MAPT-AS1 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIMAPT-AS1 [Mapview hg19]  MAPT-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW205584 AW770488 BC018035 BM714794
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_167251 NT_187663
Consensus coding sequences : CCDS (NCBI)MAPT-AS1
Cluster EST : UnigeneHs.666302 [ NCBI ]
CGAP (NCI)Hs.666302
Gene ExpressionMAPT-AS1 [ NCBI-GEO ]   MAPT-AS1 [ EBI - ARRAY_EXPRESS ]   MAPT-AS1 [ SEEK ]   MAPT-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)MAPT-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets] &nbsp [Normal Tissue Atlas] &nbsp[carcinoma Classsification] &nbsp[NCI60]
BioGPS (Tissue expression)100128977
GTEX Portal (Tissue expression)MAPT-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MAPT-AS1
DMDM Disease mutations100128977
Blocks (Seattle)MAPT-AS1
IPIIPI00981187   
Protein Interaction databases
BioGRIDMAPT-AS1
STRING (EMBL)MAPT-AS1
ZODIACMAPT-AS1
Ontologies - Pathways
Huge Navigator MAPT-AS1 [HugePedia]
snp3D : Map Gene to Disease100128977
BioCentury BCIQMAPT-AS1
ClinGenMAPT-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128977
Clinical trialMAPT-AS1
Miscellaneous
canSAR (ICR)MAPT-AS1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAPT-AS1
EVEXMAPT-AS1
GoPubMedMAPT-AS1
iHOPMAPT-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:12:20 CEST 2018

For comments and suggestions or contributions, please contact us atlasgeneticsoncology@usal.es.