OR4P4 (olfactory receptor family 4 subfamily P member 4)

1. Identity

Alias_names
General Information
olfactory receptor, family 4, subfamily P, member 4
Other alias
HGNC (Hugo) OR4P4
LocusID (NCBI) 81300
Atlas_Id 71348
Location 11q11  [Link to chromosome band 11q11]
Location_base_pair Starts at 55638358 and ends at 55639296 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

2. DNA/RNA

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

 

3. External links

Nomenclature
HGNC (Hugo)OR4P4   15180
Cards
Entrez_Gene (NCBI)OR4P4  81300  olfactory receptor family 4 subfamily P member 4
AliasesOR4P3P
GeneCards (Weizmann)OR4P4
Ensembl hg19 (Hinxton)ENSG00000181927 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181927 [Gene_View] &nbspENSG00000181927 [Sequence]  chr11:55638358-55639296 [Contig_View]  OR4P4 [Vega]
ICGC DataPortalENSG00000181927
TCGA cBioPortalOR4P4
AceView (NCBI)OR4P4
Genatlas (Paris)OR4P4
WikiGenes81300
SOURCE (Princeton)OR4P4
Genetics Home Reference (NIH)OR4P4
Genomic and cartography
GoldenPath hg38 (UCSC)OR4P4  -     chr11:55638358-55639296 +  11q11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4P4  -     11q11   [Description]    (hg19-Feb_2009)
EnsemblOR4P4 - 11q11 [CytoView hg19]  OR4P4 - 11q11 [CytoView hg38]
Mapping of homologs : NCBIOR4P4 [Mapview hg19]  OR4P4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004124
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4P4
Alternative Splicing GalleryENSG00000181927
Gene ExpressionOR4P4 [ NCBI-GEO ]   OR4P4 [ EBI - ARRAY_EXPRESS ]   OR4P4 [ SEEK ]   OR4P4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4P4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets] &nbsp [Normal Tissue Atlas] &nbsp[carcinoma Classsification] &nbsp[NCI60]
GenevestigatorExpression in : [tissues] &nbsp[cell-lines] &nbsp[cancer] &nbsp[perturbations] &nbsp
BioGPS (Tissue expression)81300
GTEX Portal (Tissue expression)OR4P4
Human Protein AtlasENSG00000181927-OR4P4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGL7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGL7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGL7
Splice isoforms : SwissVarQ8NGL7
PhosPhoSitePlusQ8NGL7
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4P4
DMDM Disease mutations81300
Blocks (Seattle)OR4P4
SuperfamilyQ8NGL7
Human Protein Atlas [tissue]ENSG00000181927-OR4P4 [tissue]
Peptide AtlasQ8NGL7
HPRD14986
IPIIPI00169055   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGL7
IntAct (EBI)Q8NGL7
FunCoupENSG00000181927
BioGRIDOR4P4
STRING (EMBL)OR4P4
ZODIACOR4P4
Ontologies - Pathways
QuickGOQ8NGL7
Ontology : AmiGO###############################################################################################################################################################################################################################################################                
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                
NDEx NetworkOR4P4
Atlas of Cancer Signalling NetworkOR4P4
Wikipedia pathwaysOR4P4
Orthology - Evolution
OrthoDB81300
GeneTree (enSembl)ENSG00000181927
Phylogenetic Trees/Animal Genes : TreeFamOR4P4
HOVERGENQ8NGL7
HOGENOMQ8NGL7
Homologs : HomoloGeneOR4P4
Homology/Alignments : Family Browser (UCSC)OR4P4
Gene fusions - Rearrangements
Fusion : QuiverOR4P4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4P4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4P4
dbVarOR4P4
ClinVarOR4P4
1000_GenomesOR4P4 
Exome Variant ServerOR4P4
ExAC (Exome Aggregation Consortium)ENSG00000181927
GNOMAD BrowserENSG00000181927
Varsome BrowserOR4P4
Genetic variants : HAPMAP81300
Genomic Variants (DGV)OR4P4 [DGVbeta]
DECIPHEROR4P4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4P4 
Mutations
ICGC Data PortalOR4P4 
TCGA Data PortalOR4P4 
Broad Tumor PortalOR4P4
OASIS PortalOR4P4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4P4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4P4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4P4
DgiDB (Drug Gene Interaction Database)OR4P4
DoCM (Curated mutations)OR4P4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4P4 (select a term)
intoGenOR4P4
Cancer3DOR4P4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR4P4
MedgenOR4P4
Genetic Testing Registry OR4P4
NextProtQ8NGL7 [Medical]
TSGene81300
GENETestsOR4P4
Target ValidationOR4P4
Huge Navigator OR4P4 [HugePedia]
snp3D : Map Gene to Disease81300
BioCentury BCIQOR4P4
ClinGenOR4P4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81300
Chemical/Pharm GKB GenePA32337
Clinical trialOR4P4
Miscellaneous
canSAR (ICR)OR4P4 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4P4
EVEXOR4P4
GoPubMedOR4P4
iHOPOR4P4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:21:50 CEST 2018

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