PKD1P6-NPIPP1 (PKD1P6-NPIPP1 readthrough)

1. Identity

Other alias
General Information
HGNC (Hugo) -
LocusID (NCBI) 105369154
Atlas_Id 78295
Location 16p13.11  [Link to chromosome band 16p13]
Location_base_pair Starts at 15104302 and ends at 15136959 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

2. DNA/RNA

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

 


3. External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)PKD1P6-NPIPP1  105369154  PKD1P6-NPIPP1 readthrough
Aliases
GeneCards (Weizmann)PKD1P6-NPIPP1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View] &nbsp [Sequence]  chr16:15104302-15136959 [Contig_View]  PKD1P6-NPIPP1 [Vega]
TCGA cBioPortalPKD1P6-NPIPP1
AceView (NCBI)PKD1P6-NPIPP1
Genatlas (Paris)PKD1P6-NPIPP1
WikiGenes105369154
SOURCE (Princeton)PKD1P6-NPIPP1
Genetics Home Reference (NIH)PKD1P6-NPIPP1
Genomic and cartography
GoldenPath hg38 (UCSC)PKD1P6-NPIPP1  -     chr16:15104302-15136959 -  16p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PKD1P6-NPIPP1  -     16p13.11   [Description]    (hg19-Feb_2009)
EnsemblPKD1P6-NPIPP1 - 16p13.11 [CytoView hg19]  PKD1P6-NPIPP1 - 16p13.11 [CytoView hg38]
Mapping of homologs : NCBIPKD1P6-NPIPP1 [Mapview hg19]  PKD1P6-NPIPP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA308851 AK023376 AK131084 AK131085 AK302708
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187607
Consensus coding sequences : CCDS (NCBI)PKD1P6-NPIPP1
Cluster EST : UnigeneHs.720303 [ NCBI ]
CGAP (NCI)Hs.720303
Gene ExpressionPKD1P6-NPIPP1 [ NCBI-GEO ]   PKD1P6-NPIPP1 [ EBI - ARRAY_EXPRESS ]   PKD1P6-NPIPP1 [ SEEK ]   PKD1P6-NPIPP1 [ MEM ]
Gene Expression Viewer (FireBrowse)PKD1P6-NPIPP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets] &nbsp [Normal Tissue Atlas] &nbsp[carcinoma Classsification] &nbsp[NCI60]
BioGPS (Tissue expression)105369154
GTEX Portal (Tissue expression)PKD1P6-NPIPP1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PKD1P6-NPIPP1
DMDM Disease mutations105369154
Blocks (Seattle)PKD1P6-NPIPP1
Protein Interaction databases
BioGRIDPKD1P6-NPIPP1
STRING (EMBL)PKD1P6-NPIPP1
ZODIACPKD1P6-NPIPP1
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease105369154
BioCentury BCIQPKD1P6-NPIPP1
ClinGenPKD1P6-NPIPP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105369154
Clinical trialPKD1P6-NPIPP1
Miscellaneous
canSAR (ICR)PKD1P6-NPIPP1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePKD1P6-NPIPP1
EVEXPKD1P6-NPIPP1
GoPubMedPKD1P6-NPIPP1
iHOPPKD1P6-NPIPP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:24:03 CEST 2018

For comments and suggestions or contributions, please contact us atlasgeneticsoncology@usal.es.