SNAR-C5 (small ILF3/NF90-associated RNA C5)

1. Identity

Other alias
General Information
HGNC (Hugo) SNAR-C5
LocusID (NCBI) 100170223
Atlas_Id 73627
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 47913051 and ends at 47913170 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

2. DNA/RNA

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

 


3. External links

Nomenclature
HGNC (Hugo)SNAR-C5   34323
Cards
Entrez_Gene (NCBI)SNAR-C5  100170223  small ILF3/NF90-associated RNA C5
Aliases
GeneCards (Weizmann)SNAR-C5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View] &nbsp [Sequence]  chr19:47913051-47913170 [Contig_View]  SNAR-C5 [Vega]
TCGA cBioPortalSNAR-C5
AceView (NCBI)SNAR-C5
Genatlas (Paris)SNAR-C5
WikiGenes100170223
SOURCE (Princeton)SNAR-C5
Genetics Home Reference (NIH)SNAR-C5
Genomic and cartography
GoldenPath hg38 (UCSC)SNAR-C5  -     chr19:47913051-47913170 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNAR-C5  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblSNAR-C5 - 19q13.33 [CytoView hg19]  SNAR-C5 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBISNAR-C5 [Mapview hg19]  SNAR-C5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNAR-C5
Cluster EST : UnigeneHs.717052 [ NCBI ]
CGAP (NCI)Hs.717052
Gene ExpressionSNAR-C5 [ NCBI-GEO ]   SNAR-C5 [ EBI - ARRAY_EXPRESS ]   SNAR-C5 [ SEEK ]   SNAR-C5 [ MEM ]
Gene Expression Viewer (FireBrowse)SNAR-C5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets] &nbsp [Normal Tissue Atlas] &nbsp[carcinoma Classsification] &nbsp[NCI60]
BioGPS (Tissue expression)100170223
GTEX Portal (Tissue expression)SNAR-C5
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNAR-C5
DMDM Disease mutations100170223
Blocks (Seattle)SNAR-C5
Protein Interaction databases
BioGRIDSNAR-C5
STRING (EMBL)SNAR-C5
ZODIACSNAR-C5
Ontologies - Pathways
Huge Navigator SNAR-C5 [HugePedia]
snp3D : Map Gene to Disease100170223
BioCentury BCIQSNAR-C5
ClinGenSNAR-C5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100170223
Chemical/Pharm GKB GenePA162404045
Clinical trialSNAR-C5
Miscellaneous
canSAR (ICR)SNAR-C5 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNAR-C5
EVEXSNAR-C5
GoPubMedSNAR-C5
iHOPSNAR-C5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:30:16 CEST 2018

For comments and suggestions or contributions, please contact us atlasgeneticsoncology@usal.es.