SPATA19 (spermatogenesis associated 19)

1. Identity

Alias_symbol (synonym)
General Information
spergen1
SPAS1
CT132
Other alias
HGNC (Hugo) SPATA19
LocusID (NCBI) 219938
Atlas_Id 51699
Location 11q25  [Link to chromosome band 11q25]
Location_base_pair Starts at 133840622 and ends at 133845538 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

2. DNA/RNA

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

 


3. External links

Nomenclature
HGNC (Hugo)SPATA19   30614
Cards
Entrez_Gene (NCBI)SPATA19  219938  spermatogenesis associated 19
AliasesCT132; SPAS1; spergen1
GeneCards (Weizmann)SPATA19
Ensembl hg19 (Hinxton)ENSG00000166118 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166118 [Gene_View] &nbspENSG00000166118 [Sequence]  chr11:133840622-133845538 [Contig_View]  SPATA19 [Vega]
ICGC DataPortalENSG00000166118
TCGA cBioPortalSPATA19
AceView (NCBI)SPATA19
Genatlas (Paris)SPATA19
WikiGenes219938
SOURCE (Princeton)SPATA19
Genetics Home Reference (NIH)SPATA19
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA19  -     chr11:133840622-133845538 -  11q25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA19  -     11q25   [Description]    (hg19-Feb_2009)
EnsemblSPATA19 - 11q25 [CytoView hg19]  SPATA19 - 11q25 [CytoView hg38]
Mapping of homologs : NCBISPATA19 [Mapview hg19]  SPATA19 [Mapview hg38]
OMIM609805   
Gene and transcription
Genbank (Entrez)AF521713 AK098717 BC058039 BX096445 HM005656
RefSeq transcript (Entrez)NM_001291992 NM_174927
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA19
Cluster EST : UnigeneHs.97541 [ NCBI ]
CGAP (NCI)Hs.97541
Alternative Splicing GalleryENSG00000166118
Gene ExpressionSPATA19 [ NCBI-GEO ]   SPATA19 [ EBI - ARRAY_EXPRESS ]   SPATA19 [ SEEK ]   SPATA19 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets] &nbsp [Normal Tissue Atlas] &nbsp[carcinoma Classsification] &nbsp[NCI60]
GenevestigatorExpression in : [tissues] &nbsp[cell-lines] &nbsp[cancer] &nbsp[perturbations] &nbsp
BioGPS (Tissue expression)219938
GTEX Portal (Tissue expression)SPATA19
Human Protein AtlasENSG00000166118-SPATA19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5L4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5L4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5L4
Splice isoforms : SwissVarQ7Z5L4
PhosPhoSitePlusQ7Z5L4
Domains : Interpro (EBI)SPATA19   
Domain families : Pfam (Sanger)SPATA19 (PF15212)   
Domain families : Pfam (NCBI)pfam15212   
Conserved Domain (NCBI)SPATA19
DMDM Disease mutations219938
Blocks (Seattle)SPATA19
SuperfamilyQ7Z5L4
Human Protein Atlas [tissue]ENSG00000166118-SPATA19 [tissue]
Peptide AtlasQ7Z5L4
HPRD11594
IPIIPI00470628   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5L4
IntAct (EBI)Q7Z5L4
FunCoupENSG00000166118
BioGRIDSPATA19
STRING (EMBL)SPATA19
ZODIACSPATA19
Ontologies - Pathways
QuickGOQ7Z5L4
Ontology : AmiGOmitochondrial outer membrane  multicellular organism development  spermatogenesis  cell differentiation  
Ontology : EGO-EBImitochondrial outer membrane  multicellular organism development  spermatogenesis  cell differentiation  
NDEx NetworkSPATA19
Atlas of Cancer Signalling NetworkSPATA19
Wikipedia pathwaysSPATA19
Orthology - Evolution
OrthoDB219938
GeneTree (enSembl)ENSG00000166118
Phylogenetic Trees/Animal Genes : TreeFamSPATA19
HOGENOMQ7Z5L4
Homologs : HomoloGeneSPATA19
Homology/Alignments : Family Browser (UCSC)SPATA19
Gene fusions - Rearrangements
Fusion : QuiverSPATA19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA19
dbVarSPATA19
ClinVarSPATA19
1000_GenomesSPATA19 
Exome Variant ServerSPATA19
ExAC (Exome Aggregation Consortium)ENSG00000166118
GNOMAD BrowserENSG00000166118
Varsome BrowserSPATA19
Genetic variants : HAPMAP219938
Genomic Variants (DGV)SPATA19 [DGVbeta]
DECIPHERSPATA19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA19 
Mutations
ICGC Data PortalSPATA19 
TCGA Data PortalSPATA19 
Broad Tumor PortalSPATA19
OASIS PortalSPATA19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA19
DgiDB (Drug Gene Interaction Database)SPATA19
DoCM (Curated mutations)SPATA19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA19 (select a term)
intoGenSPATA19
Cancer3DSPATA19(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609805   
Orphanet
DisGeNETSPATA19
MedgenSPATA19
Genetic Testing Registry SPATA19
NextProtQ7Z5L4 [Medical]
TSGene219938
GENETestsSPATA19
Target ValidationSPATA19
Huge Navigator SPATA19 [HugePedia]
snp3D : Map Gene to Disease219938
BioCentury BCIQSPATA19
ClinGenSPATA19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219938
Chemical/Pharm GKB GenePA142670884
Clinical trialSPATA19
Miscellaneous
canSAR (ICR)SPATA19 (select the gene name)
DataMed IndexSPATA19
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA19
EVEXSPATA19
GoPubMedSPATA19
iHOPSPATA19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 17 18:39:49 CET 2019

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