TAT-AS1 (TAT antisense RNA 1)

1. Identity

Other alias
General Information
HGNC (Hugo) TAT-AS1
LocusID (NCBI) 100132529
Atlas_Id 74508
Location 16q22.2  [Link to chromosome band 16q22]
Location_base_pair Starts at 71565789 and ends at 71572438 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

2. DNA/RNA

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

 


3. External links

Nomenclature
HGNC (Hugo)TAT-AS1   51369
Cards
Entrez_Gene (NCBI)TAT-AS1  100132529  TAT antisense RNA 1
Aliases
GeneCards (Weizmann)TAT-AS1
Ensembl hg19 (Hinxton)ENSG00000260886 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260886 [Gene_View] &nbspENSG00000260886 [Sequence]  chr16:71565789-71572438 [Contig_View]  TAT-AS1 [Vega]
ICGC DataPortalENSG00000260886
TCGA cBioPortalTAT-AS1
AceView (NCBI)TAT-AS1
Genatlas (Paris)TAT-AS1
WikiGenes100132529
SOURCE (Princeton)TAT-AS1
Genetics Home Reference (NIH)TAT-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)TAT-AS1  -     chr16:71565789-71572438 +  16q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAT-AS1  -     16q22.2   [Description]    (hg19-Feb_2009)
EnsemblTAT-AS1 - 16q22.2 [CytoView hg19]  TAT-AS1 - 16q22.2 [CytoView hg38]
Mapping of homologs : NCBITAT-AS1 [Mapview hg19]  TAT-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA913333 BM853033 BU853575 BU854532 HY017421
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAT-AS1
Cluster EST : UnigeneHs.710296 [ NCBI ]
CGAP (NCI)Hs.710296
Alternative Splicing GalleryENSG00000260886
Gene ExpressionTAT-AS1 [ NCBI-GEO ]   TAT-AS1 [ EBI - ARRAY_EXPRESS ]   TAT-AS1 [ SEEK ]   TAT-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TAT-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets] &nbsp [Normal Tissue Atlas] &nbsp[carcinoma Classsification] &nbsp[NCI60]
BioGPS (Tissue expression)100132529
GTEX Portal (Tissue expression)TAT-AS1
Human Protein AtlasENSG00000260886-TAT-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TAT-AS1
DMDM Disease mutations100132529
Blocks (Seattle)TAT-AS1
Human Protein Atlas [tissue]ENSG00000260886-TAT-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000260886
BioGRIDTAT-AS1
STRING (EMBL)TAT-AS1
ZODIACTAT-AS1
Ontologies - Pathways
Huge Navigator TAT-AS1 [HugePedia]
snp3D : Map Gene to Disease100132529
BioCentury BCIQTAT-AS1
ClinGenTAT-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132529
Clinical trialTAT-AS1
Miscellaneous
canSAR (ICR)TAT-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAT-AS1
EVEXTAT-AS1
GoPubMedTAT-AS1
iHOPTAT-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:34:08 CEST 2018

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