TM4SF1-AS1 (TM4SF1 antisense RNA 1)

1. Identity

Alias_names
General Information
Other alias-
HGNC (Hugo) TM4SF1-AS1
LocusID (NCBI) 100874091
Atlas_Id 74734
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 149377778 and ends at 149386583 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

2. DNA/RNA

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

 


3. External links

Nomenclature
HGNC (Hugo)TM4SF1-AS1   40587
Cards
Entrez_Gene (NCBI)TM4SF1-AS1  100874091  TM4SF1 antisense RNA 1
Aliases
GeneCards (Weizmann)TM4SF1-AS1
Ensembl hg19 (Hinxton)ENSG00000240541 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240541 [Gene_View] &nbspENSG00000240541 [Sequence]  chr3:149377778-149386583 [Contig_View]  TM4SF1-AS1 [Vega]
ICGC DataPortalENSG00000240541
TCGA cBioPortalTM4SF1-AS1
AceView (NCBI)TM4SF1-AS1
Genatlas (Paris)TM4SF1-AS1
WikiGenes100874091
SOURCE (Princeton)TM4SF1-AS1
Genetics Home Reference (NIH)TM4SF1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)TM4SF1-AS1  -     chr3:149377778-149386583 +  3q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TM4SF1-AS1  -     3q25.1   [Description]    (hg19-Feb_2009)
EnsemblTM4SF1-AS1 - 3q25.1 [CytoView hg19]  TM4SF1-AS1 - 3q25.1 [CytoView hg38]
Mapping of homologs : NCBITM4SF1-AS1 [Mapview hg19]  TM4SF1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BU753850 CB956551 FN058250
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TM4SF1-AS1
Cluster EST : UnigeneHs.549633 [ NCBI ]
CGAP (NCI)Hs.549633
Alternative Splicing GalleryENSG00000240541
Gene ExpressionTM4SF1-AS1 [ NCBI-GEO ]   TM4SF1-AS1 [ EBI - ARRAY_EXPRESS ]   TM4SF1-AS1 [ SEEK ]   TM4SF1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TM4SF1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets] &nbsp [Normal Tissue Atlas] &nbsp[carcinoma Classsification] &nbsp[NCI60]
BioGPS (Tissue expression)100874091
GTEX Portal (Tissue expression)TM4SF1-AS1
Human Protein AtlasENSG00000240541-TM4SF1-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TM4SF1-AS1
DMDM Disease mutations100874091
Blocks (Seattle)TM4SF1-AS1
Human Protein Atlas [tissue]ENSG00000240541-TM4SF1-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000240541
BioGRIDTM4SF1-AS1
STRING (EMBL)TM4SF1-AS1
ZODIACTM4SF1-AS1
Ontologies - Pathways
Huge Navigator TM4SF1-AS1 [HugePedia]
snp3D : Map Gene to Disease100874091
BioCentury BCIQTM4SF1-AS1
ClinGenTM4SF1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874091
Clinical trialTM4SF1-AS1
Miscellaneous
canSAR (ICR)TM4SF1-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTM4SF1-AS1
EVEXTM4SF1-AS1
GoPubMedTM4SF1-AS1
iHOPTM4SF1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:34:59 CEST 2018

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