TMEM238 (transmembrane protein 238)

1. Identity

Other alias
General Information
HGNC (Hugo) TMEM238
LocusID (NCBI) 388564
Atlas_Id 74902
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55379244 and ends at 55384259 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

2. DNA/RNA

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

 

3. External links

Nomenclature
HGNC (Hugo)TMEM238   40042
Cards
Entrez_Gene (NCBI)TMEM238  388564  transmembrane protein 238
Aliases
GeneCards (Weizmann)TMEM238
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View] &nbsp [Sequence]  chr19:55379244-55384259 [Contig_View]  TMEM238 [Vega]
TCGA cBioPortalTMEM238
AceView (NCBI)TMEM238
Genatlas (Paris)TMEM238
WikiGenes388564
SOURCE (Princeton)TMEM238
Genetics Home Reference (NIH)TMEM238
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM238  -     chr19:55379244-55384259 -  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM238  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblTMEM238 - 19q13.42 [CytoView hg19]  TMEM238 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBITMEM238 [Mapview hg19]  TMEM238 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC052596
RefSeq transcript (Entrez)NM_001190764
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM238
Cluster EST : UnigeneHs.534672 [ NCBI ]
CGAP (NCI)Hs.534672
Gene ExpressionTMEM238 [ NCBI-GEO ]   TMEM238 [ EBI - ARRAY_EXPRESS ]   TMEM238 [ SEEK ]   TMEM238 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM238 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets] &nbsp [Normal Tissue Atlas] &nbsp[carcinoma Classsification] &nbsp[NCI60]
GenevestigatorExpression in : [tissues] &nbsp[cell-lines] &nbsp[cancer] &nbsp[perturbations] &nbsp
BioGPS (Tissue expression)388564
GTEX Portal (Tissue expression)TMEM238
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JI98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JI98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JI98
Splice isoforms : SwissVarC9JI98
PhosPhoSitePlusC9JI98
Domains : Interpro (EBI)TMEM238   
Domain families : Pfam (Sanger)TMEM238 (PF15125)   
Domain families : Pfam (NCBI)pfam15125   
Conserved Domain (NCBI)TMEM238
DMDM Disease mutations388564
Blocks (Seattle)TMEM238
SuperfamilyC9JI98
Peptide AtlasC9JI98
IPIIPI00373972   
Protein Interaction databases
DIP (DOE-UCLA)C9JI98
IntAct (EBI)C9JI98
BioGRIDTMEM238
STRING (EMBL)TMEM238
ZODIACTMEM238
Ontologies - Pathways
QuickGOC9JI98
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM238
Atlas of Cancer Signalling NetworkTMEM238
Wikipedia pathwaysTMEM238
Orthology - Evolution
OrthoDB388564
Phylogenetic Trees/Animal Genes : TreeFamTMEM238
HOVERGENC9JI98
HOGENOMC9JI98
Homologs : HomoloGeneTMEM238
Homology/Alignments : Family Browser (UCSC)TMEM238
Gene fusions - Rearrangements
Fusion : QuiverTMEM238
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM238 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM238
dbVarTMEM238
ClinVarTMEM238
1000_GenomesTMEM238 
Exome Variant ServerTMEM238
Varsome BrowserTMEM238
Genetic variants : HAPMAP388564
Genomic Variants (DGV)TMEM238 [DGVbeta]
DECIPHERTMEM238 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM238 
Mutations
ICGC Data PortalTMEM238 
TCGA Data PortalTMEM238 
Broad Tumor PortalTMEM238
OASIS PortalTMEM238 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM238  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM238
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM238
DgiDB (Drug Gene Interaction Database)TMEM238
DoCM (Curated mutations)TMEM238 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM238 (select a term)
intoGenTMEM238
Cancer3DTMEM238(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM238
MedgenTMEM238
Genetic Testing Registry TMEM238
NextProtC9JI98 [Medical]
TSGene388564
GENETestsTMEM238
Target ValidationTMEM238
Huge Navigator TMEM238 [HugePedia]
snp3D : Map Gene to Disease388564
BioCentury BCIQTMEM238
ClinGenTMEM238
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388564
Chemical/Pharm GKB GenePA166049062
Clinical trialTMEM238
Miscellaneous
canSAR (ICR)TMEM238 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM238
EVEXTMEM238
GoPubMedTMEM238
iHOPTMEM238
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:35:36 CEST 2018

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