UPK1A-AS1 (UPK1A antisense RNA 1)

1. Identity

Alias_names
General Information
Other alias-
HGNC (Hugo) UPK1A-AS1
LocusID (NCBI) 100862728
Atlas_Id 75498
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 35667948 and ends at 35673291 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

2. DNA/RNA

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

 


3. External links

Nomenclature
HGNC (Hugo)UPK1A-AS1   40603
Cards
Entrez_Gene (NCBI)UPK1A-AS1  100862728  UPK1A antisense RNA 1
Aliases
GeneCards (Weizmann)UPK1A-AS1
Ensembl hg19 (Hinxton)ENSG00000226510 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226510 [Gene_View] &nbspENSG00000226510 [Sequence]  chr19:35667948-35673291 [Contig_View]  UPK1A-AS1 [Vega]
ICGC DataPortalENSG00000226510
TCGA cBioPortalUPK1A-AS1
AceView (NCBI)UPK1A-AS1
Genatlas (Paris)UPK1A-AS1
WikiGenes100862728
SOURCE (Princeton)UPK1A-AS1
Genetics Home Reference (NIH)UPK1A-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)UPK1A-AS1  -     chr19:35667948-35673291 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UPK1A-AS1  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblUPK1A-AS1 - 19q13.12 [CytoView hg19]  UPK1A-AS1 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIUPK1A-AS1 [Mapview hg19]  UPK1A-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC007817 BF683645 BX283291 EL733629
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UPK1A-AS1
Cluster EST : UnigeneHs.569952 [ NCBI ]
CGAP (NCI)Hs.569952
Alternative Splicing GalleryENSG00000226510
Gene ExpressionUPK1A-AS1 [ NCBI-GEO ]   UPK1A-AS1 [ EBI - ARRAY_EXPRESS ]   UPK1A-AS1 [ SEEK ]   UPK1A-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)UPK1A-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets] &nbsp [Normal Tissue Atlas] &nbsp[carcinoma Classsification] &nbsp[NCI60]
BioGPS (Tissue expression)100862728
GTEX Portal (Tissue expression)UPK1A-AS1
Human Protein AtlasENSG00000226510-UPK1A-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)UPK1A-AS1
DMDM Disease mutations100862728
Blocks (Seattle)UPK1A-AS1
Human Protein Atlas [tissue]ENSG00000226510-UPK1A-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000226510
BioGRIDUPK1A-AS1
STRING (EMBL)UPK1A-AS1
ZODIACUPK1A-AS1
Ontologies - Pathways
Huge Navigator UPK1A-AS1 [HugePedia]
snp3D : Map Gene to Disease100862728
BioCentury BCIQUPK1A-AS1
ClinGenUPK1A-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100862728
Clinical trialUPK1A-AS1
Miscellaneous
canSAR (ICR)UPK1A-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUPK1A-AS1
EVEXUPK1A-AS1
GoPubMedUPK1A-AS1
iHOPUPK1A-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:37:45 CEST 2018

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